scRNA-seq

UMAP/Clustering


Patient: XX

  • Filtering
    UMI >= 1000
    Mitochondrial content <= 10
    doublet removal : Yes

UMAP

UMAP by treatment

Split by sample

Distribution of number of cells

Clustering

  • resolution 0.2
  • resolution 0.4

Resolution 0.2 UMAP

Resolution 0.2 UMAP (label)

Cell numbers

Proportion1

Proportion2

Resolution 0.4 UMAP

Resolution 0.4 UMAP (label)

Cell numbers

Proportion1

Proportion2

Sankey plot

Markers

  • resolution 0.2
  • resolution 0.4

Markers (0.2)

Download cluster marker file

Heatmap (res 0.2)

Top 5 genes from each cluster

Markers (0.4)

Heatmap (res 0.4)

Top 5 genes from each cluster