scRNA-seq
UMAP/Clustering
Patient: XX
- Filtering
UMI >= 1000
Mitochondrial content <= 10
doublet removal : Yes
UMAP
UMAP by treatment
Split by sample
Distribution of number of cells
Clustering
- resolution 0.2
- resolution 0.4
Resolution 0.2 UMAP
Resolution 0.2 UMAP (label)
Cell numbers
Proportion1
Proportion2
Resolution 0.4 UMAP
Resolution 0.4 UMAP (label)
Cell numbers
Proportion1
Proportion2
Sankey plot
Markers
- resolution 0.2
- resolution 0.4
Markers (0.2)
Download cluster marker file
Heatmap (res 0.2)
Top 5 genes from each cluster
Markers (0.4)
Heatmap (res 0.4)
Top 5 genes from each cluster